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QuickBooks: Tracking and Collecting 1099 Information

QuickBooks: Tracking and Collecting 1099 Information



As the year winds down, many business owners start turning their attention to tax forms, and one of the biggest items on that list is 1099 reporting.

Whether you work with independent contractors, pay rent to a noncorporate landlord, or outsource specialized services, staying organized throughout the year makes this process far smoother once January arrives.

QuickBooks offers tools that help you track vendor details, categorize payments, and generate the correct forms with confidence. With a little preparation now, you can avoid a last-minute scramble later.

Know Which Vendors Need a 1099

The first step is identifying who qualifies for a 1099. The most common forms you may file are:

1099-NEC

Used to report payments of $600 or more made to independent contractors, freelancers, and other service providers during the course of business. Only payments made by check, direct deposit, or cash are included. Payments made by credit card or third-party platforms like PayPal, Venmo, or similar networks are omitted, as those fall under the 1099-K rules.

1099-MISC

Often used for rent payments or certain other specialized categories. While the form includes boxes for royalties and other items, many small businesses primarily use it for reporting rent paid to unincorporated landlords.

Due dates vary depending on the form type, so review the IRS timeline early and give yourself space to prepare.

Gather and Record W-9 Information

A smooth reporting season starts with accurate vendor records. Any time you begin working with a new contractor or vendor, request a completed W-9 before the first payment is issued. This gives you:

  • Legal name and business name, if different
  • Entity type
  • Tax ID Number
  • Address needed for the 1099

QuickBooks allows you to store this information directly within each vendor profile, and you can even attach a digital copy of the W-9 for easy reference.

Once the W-9 is in hand, update the vendor record and check the box that marks the vendor as eligible for 1099 tracking. This allows QuickBooks to include them in contractor reports later.

Set Up Accounts for Accurate Categorization

Accurate 1099s rely on the way you categorize expenses throughout the year. Take some time to review which accounts in your chart of accounts relate to contractor services or rent. Running a profit-and-loss report can help you spot payments made to individuals or businesses that may need to be tracked.

If you already use the contractor tools in QuickBooks, you have access to a detailed view all contractor payments report. This provides a clear breakdown of amounts paid and can be exported to Excel if you want to double-check totals or prepare worksheets for your records.

Be aware that some QuickBooks reports will only populate correctly if your accounts are mapped to 1099 boxes within the 1099 preparation workflow. This means the final mapping step in QuickBooks is important when you’re getting ready to file.

Generate and Review 1099s in QuickBooks

When you're ready, QuickBooks walks you through preparing your forms. You will confirm vendor information, map expense accounts to the correct boxes, and review totals before filing. The platform offers two approaches: QuickBooks prepares the forms for you, or you prepare your own forms and use QuickBooks for e-filing.

Both options allow you to file federally and furnish copies to recipients. State filing availability varies, so check QuickBooks’ supported-states list if you have vendors outside Wisconsin.

Another helpful feature: you don’t pay for e-filing until you actually submit the forms, which means you’re free to review and preview as much as you need.

If you prefer not to use QuickBooks for filing, options like IRS FIRE or IRIS are available, though they require applying for a Transmitter Control Code. Some businesses also submit forms through their state’s online tax portal.

Build Good Habits Throughout the Year

A little ongoing attention makes year-end far easier. Consider adopting these practices:

  • Request W-9s at the start of every new vendor relationship
  • Attach W-9s to vendor profiles in QuickBooks
  • Mark vendors for 1099 tracking as soon as you enter them
  • Periodically review contractor and rent-related accounts
  • Run contractor payment reports before the end of the year to check for missing info

By keeping vendor records up to date, you avoid trying to track down missing forms or correct outdated addresses in January.

Preparing 1099s doesn’t need to feel overwhelming. With thoughtful setup, consistent recordkeeping, and the tools built into QuickBooks, you can move through the filing process with confidence and save valuable time during tax season.

If you need help clarifying requirements or navigating QuickBooks settings, your SVA representative is always available to support you.

© 2025 SVA Certified Public Accountants

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Biz Tip Topic Expert: Britney Denk, CPA

Britney Denk, CPA

Britney is a Supervisor with SVA Certified Public Accountants

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